Showing posts sorted by date for query fear. Sort by relevance Show all posts
Showing posts sorted by date for query fear. Sort by relevance Show all posts

Wednesday, December 4, 2019

What is a scream? The acoustics of a primal human call

Getty Images

Screams are prompted by a variety of emotions — from joyful surprise to abject terror. No matter what sparks them, however, human screams share distinctive acoustic parameters that listeners are attuned to, suggests a new study published by the Journal of Nonverbal Behavior.

“Screams require a lot of vocal force and cause the vocal folds to vibrate in a chaotic, inconsistent way,” says senior author Harold Gouzoules, a professor of psychology at Emory University. “Despite the inherent variation in the way that screams are produced, our findings show that listeners can readily distinguish a scream from other human calls. And we are honing in on how they make that distinction.”

Jay Schwartz is first author of the paper and Jonathan Engleberg is a co-author. They are both Emory PhD candidates in Gouzoules’ Bioacoustics Lab. Gouzoules began researching monkey screams in 1980, before becoming one of the few scientists studying human screams about 10 years ago. He is interested in the origins of screams and the role they played in human development.

“Animal screams occur almost always in the context of a fight or in response to a predator,” Gouzoules says. “Human screams happen in a much broader array of contexts, which makes them much more interesting.”

Gouzoules' Bioacoustics Lab has amassed an impressive library of high-intensity, visceral sounds — from TV and movie performances to the screams of non-actors reacting to actual events posted to online sites such as YouTube.

For the current study, the researchers presented 182 participants with a range of human calls. Some of the calls were screams of aggression, exclamation, excitement, fear or pain. Others calls included cries, laughter and yells.

The participants showed strong agreement for what classified as a scream. An acoustical analysis for the calls the participants classified as screams, compared to those they did not, included a higher pitch and roughness, or harshness, to the sound; a wider variability in frequency; and a higher peak frequency.

The current paper is part of an extensive program of research into screams by Gouzoules. In another recently published article, his lab has found that listeners cannot distinguish acted screams from naturally occurring screams. Listeners can, however, correctly identify whether pairs of screams were produced by the same person or two different people.

Related:
Screams contain a calling card for vocalizer's identity

Tuesday, August 20, 2019

Skeletal shapes key to rapid recognition of objects

"You can think of it like a child's stick drawing of a person," says Emory psychologist Stella Lourenco, explaining the skeletal geometry that aids the vision system in object recognition. (Getty Images)

By Carol Clark

In the blink of an eye, the human visual system can process an object, determining whether it’s a cup or a sock within milliseconds, and with seemingly little effort. It’s well-established that an object’s shape is a critical visual cue to help the eyes and brain perform this trick. A new study, however, finds that while the outer shape of an object is important for rapid recognition, the object’s inner “skeleton” may play an even more important role.

Scientific Reports published the research by psychologists at Emory University, showing that a key visual tool for object recognition is the medial axis of an object, or its skeletal geometry.

“When we think of an object’s shape, we typically imagine the outer contours,” explains Vladislav Ayzenberg, first author of the paper and an Emory PhD candidate in psychology. “But there is also a deeper, more abstract property of shape that’s described by skeletal geometry. Our research suggests that this inner, invisible mechanism may be crucial to recognizing an object so quickly.”

“You can think of it like a child’s stick drawing of a person,” adds Stella Lourenco, senior author of the study and an associate professor of psychology at Emory. “Using a stick figure to represent a person gives you the basic visual information you need to immediately perceive the figure’s meaning.”

The Lourenco lab researches human visual perception, cognition and development. Visual perception of an object begins when light hits our eyes and the object is projected as a two-dimensional image onto the photoreceptor cells of the retina.

“A lot of internal machinery is whirring between the eyes and brain to facilitate perception and recognition within 70 milliseconds,” Ayzenberg says. “I’m fascinated by the neural computations that go into that process.”

Although most people take it for granted, object recognition is a remarkable feat. “You can teach a two-year-old what a dog is by pointing out a real dog or showing the child a picture in a book,” Lourenco says. “After seeing such examples a child can rapidly and with ease recognize other dogs as dogs, despite variations in their individual appearances.”



The human ability at object recognition is robust despite changes in a class of objects such as outer contours, sizes, textures and colors. For the current paper, the researchers developed a series of experiments to test the role of skeletal geometry in the process.

In one experiment, participants were presented with paired images of 150 abstract 3D objects on a computer. The objects had 30 different skeletal structures. Each object was rendered with five different surface forms, to change the visible shape of the object, without altering the underlying skeleton. The participants were asked to judge whether each pair of images showed the same or different objects. The results found that skeletal similarity was a significant predictor for a correct response.

A second experiment, based on adaptations of three of the objects, tested the effects of proportional changes to the shape skeleton. Participants were able to accurately predict object similarity at a rate significantly above chance at every level of skeletal change.

A third experiment tested whether an object’s skeleton was a better predictor of object similarity than its surface form. Participants successfully matched objects by their skeletal structure or surface forms when each cue was presented in isolation. They showed a preference, however, to match objects by their skeletons, as opposed to their surface forms, when these cues conflicted with one another.

The results suggest that the visual system is not only highly sensitive to the skeletal structure of objects, but that this sensitivity may play an even bigger role in shape perception than object contours.

“Skeletal geometry appears to be more important than previously realized, but it is certainly not the only tool used in object recognition,” Lourenco says. “It may be that the visual system starts with the skeletal structure, instead of the outline of an object, and then maps other properties, such as textures and colors, onto it.”

In addition to adding to fundamental knowledge of the human vision system, the study may give insights into improving capabilities for artificial intelligence (AI). Rapid and accurate object recognition, for example, is vital for AI systems on self-driving cars.

“The best model for a machine-learning system is likely a human-learning system,” Ayzenberg says. “The human vision system has solved the problem of object recognition through evolution and adapted quite well.”

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Monday, June 24, 2019

Screams contain a 'calling card' for the vocalizer's identity

"Our findings add to our understanding of how screams are evolutionarily important," says Emory psychologist Harold Gouzoules, senior author of the paper.

By Carol Clark

Human screams convey a level of individual identity that may help explain their evolutionary origins, finds a study by scientists at Emory University.

PeerJ published the research, showing that listeners can correctly identify whether pairs of screams were produced by the same person or two different people — a critical prerequisite to individual recognition.

“Our findings add to our understanding of how screams are evolutionarily important,” says Harold Gouzoules, senior author of the paper and an Emory professor of psychology. “The ability to identify who is screaming is likely an adaptive mechanism. The idea is that you wouldn’t respond equally to just anyone’s scream. You would likely respond more urgently to a scream from your child, or from someone else important to you.”

Jonathan Engelberg is first author of the paper and Jay Schwartz is a co-author. They are both Emory PhD candidates in Gouzoules’ Bioacoustics Lab.

The ability to recognize individuals by distinctive cues or signals is essential to the organization of social behavior, the authors note, and humans are adept at making identity-related judgements based on speech — even when the speech is heavily altered. Less is known, however, about identity cues in nonlinguistic vocalizations, such as screams.

Gouzoules first began researching monkey screams in 1980, before becoming one of the few scientists studying human screams about 10 years ago.

“The origin of screams was likely to startle a predator and make it jump, perhaps allowing the prey a small chance to escape,” Gouzoules says. “That’s very different from calling out for help.”

He theorizes that as some species became more social, including monkeys and other primates, screams became a way to recruit help from relatives and friends when someone got into trouble.

Previous research by Gouzoules and others suggests that non-human primates are able to identify whether a scream is coming from an individual that is important to them. Some researchers, however, have disputed the evidence, arguing that the chaotic and inconsistent nature of screams does not make them likely conduits for individual recognition.

Gouzoules wanted to test whether humans could determine if two fairly similar screams were made by the same person or a different person. His Bioacoustics Lab has amassed an impressive library of high-intensity, visceral sounds — from TV and movie performances to the screams of non-actors reacting to actual events on YouTube videos.

For the PeerJ paper, the lab ran experiments that included 104 participants. The participants listened to audio files of pairs of screams on a computer, without any visual cues for context. Each pair was presented two seconds apart and participants were asked to determine if the screams came from the same person or a different person.

In some trials, the two screams came from two different callers, but were matched by age, gender and the context of the scream. In other trials, the screams came from the same caller but were two different screams matched for context. And in a third trial, the stimulus pairs consisted of a scream and a slightly modified version of itself, to make it longer or shorter than the original.

For all three of the experiments, most of the participants were able to correctly judge most of the time whether the screams were from the same person or not.

“Our results provide empirical evidence that screams carry enough information for listeners to discriminate between different callers,” Gouzoules says. “Although screams may not be acoustically ideal for signaling a caller’s identity, natural selection appears to have adequately shaped them so they are good enough to do the job.”

The PeerJ paper is part of an extensive program of research into screams by Gouzoules. In previous work, his lab has found that listeners cannot distinguish acted screams from naturally occurring screams.

In upcoming papers, he is zeroing in on how people determine whether they are hearing a scream or some other vocalization and how they perceive the emotional context of a scream — judging whether it’s due to happiness, anger, fear or pain.

Photo: Getty Images

Related:
The psychology of screams

Thursday, April 11, 2019

When do children alter behavior to please others?


“I have spent the past four years at Emory University investigating how an infant, who has no problem walking around the grocery store in her onesie, develops into an adult that fears public speaking for fear of being negatively judged,” says Sara Botto in her newly released TEDxAtlanta talk.

Botto is a doctoral candidate in the Cognition and Development program of Emory’s Department of Psychology. Together with Emory psychologist Philippe Rochat, she designed experiments to investigate when in development we become sensitive to others’ evaluations — a big part of being human.

Watch the TEDxAtlanta video below to see young children reacting to the opinions of others during the experiments, which take the form of a game called “The Robot Task.”

Botto’s research showed that, even before they can form a simple sentence, children are sensitive to the evaluations of others, and alter their behavior accordingly.

“Whether we’re aware of it or not, we’re constantly communicating values to others,” Botto says. “We’re communicating a value when we mostly compliment girls for their pretty hair or their pretty dress but boys for their intelligence. Or when we choose to offer candy as opposed to nutritious food as a reward for good behavior.”

Visit Botto’s web site, AdultingWithKids.com, to learn more about credible, science-based child development research.




Related:
Sensitivity to how others evaluate you emerges by 24 months

Monday, August 27, 2018

Sensitivity to how others evaluate you emerges by 24 months

"Image management is fascinating to me because it's so important to being human," says Sara Valencia Botto, shown posing with a toddler.  The Emory graduate student published a study on how toddlers are attuned to image, along with psychology professor Philippe Rochat. (Kay Hinton, Emory Photo/Video)

By Carol Clark

Even before toddlers can form a complete sentence, they are attuned to how others may be judging them, finds a new study by psychologists at Emory University.

The journal Developmental Psychology is publishing the results, documenting that toddlers are sensitive to the opinions of others, and that they will modify their behavior accordingly when others are watching.

“We’ve shown that by the age of 24 months, children are not only aware that other people may be evaluating them, but that they will alter their behavior to seek a positive response,” says Sara Valencia Botto, an Emory PhD candidate and first author of the study.

While previous research has documented this behavior in four- to five-year-olds, the new study suggests that it may emerge much sooner, Botto says.

“There is something specifically human in the way that we’re sensitive to the gaze of others, and how systematic and strategic we are about controlling that gaze,” says Philippe Rochat, an Emory professor of psychology who specializes in childhood development and senior author of the study. “At the very bottom, our concern for image management and reputation is about the fear of rejection, one of the main engines of the human psyche.”

This concern for reputation manifests itself in everything from spending money on makeup and designer brands to checking how many “likes” a Facebook post garners.

“Image management is fascinating to me because it’s so important to being human,” Botto says. “Many people rate their fear of public speaking above their fear of dying. If we want to understand human nature, we need to understand when and how the foundation for caring about image emerges.”

The researchers conducted experiments involving 144 children between the ages of 14 and 24 months using a remotely controlled robot toy.

In one experiment, a researcher showed a toddler how to use the remote to operate the robot. The researcher then either watched the child with a neutral expression or turned away and pretended to read a magazine. When the child was being watched, he or she showed more inhibition when hitting the buttons on the remote than when the researcher was not watching.

In a second experiment, the researcher used two different remotes when demonstrating the toy to the child. While using the first remote, the researcher smiled and said, “Wow! Isn’t that great?” And when using the second remote, the researcher frowned and said “Uh-oh! Oops, oh no!” After inviting the child to play with the toy, the researcher once again either watched the child or turned to the magazine.

The children pressed the buttons on the remote associated with the positive response from the researcher significantly more while being watched. And they used the remote associated with the negative response more when not being watched.

During a third experiment, that served as a control, the researcher gave a neutral response of “Oh, wow!” when demonstrating how to use the two remotes. The children no longer chose one remote over the other depending on whether the researcher was watching them.

The control experiment showed that in the second experiment the children really did take into account the values expressed by the experimenter when interacting with the toy, and based on those values changed their behavior depending on whether they were being watched, Botto says.

A final experiment involved two researchers sitting next to one another and using one remote. One researcher smiled and gave a positive response, “Yay! The toy moved!” when pressing the remote. The second researcher frowned and said, “Yuck! The toy moved!” when pressing the same remote. The child was then invited to play with the toy while the two researchers alternated between either watching or turning their back to the child. Results showed that the children were much more likely to press the remote when the researcher who gave the positive response was watching.

“We were surprised by the flexibility of the children’s sensitivity to others and their reactions,” Botto says. “They could track one researcher’s values of two objects and two researchers’ values of one object. It reinforces the idea that children are usually smarter than we think.”

Botto is continuing to lead the research in the Rochat lab for her PhD thesis. She is now developing experiments for children as young as 12 months to see if the sensitivity to being evaluated by others emerges even earlier than the current study documents.

And she is following the 14- to 24-month-old children involved in the published study, to see if the individual differences they showed in the experiments are maintained as they turn four and five. The researchers are measuring social and cognitive factors that may have predictive power for individual differences — such as language ability, temperament and a child’s ability to pick up on social norms and to understand that people can have beliefs different from their own.

“Ultimately, we hope to determine exactly when children begin to be sensitive to others’ evaluations and the social and cognitive factors that are necessary for that sensitivity to emerge,” Botto says.

Such basic research may translate into helping people in a clinical environment who are at the extremes of the spectrum of such sensitivity, she adds.

“It’s normal and necessary to a certain extent to care about our image with others,” Botto says. “But some people care so much that they suffer from social anxiety, while others care so little that it is not optimal in a society where cooperation is essential.”

The American Psychological Association contributed to this report. 

Related:
Babies have logical reasoning before age one, study finds
Babies' spatial reasoning predicts later math skills

Thursday, January 4, 2018

Aversion to holes driven by disgust, not fear, study finds

Clusters of holes, such as those of a lotus seed pod, may be evolutionarily indicative of contamination and disease — visual cues for rotten or moldy food or skin marred by an infection. (Photo by Peripitus/Wikipedia Commons.)

By Carol Clark

Trypophobia, commonly known as “fear of holes,” is linked to a physiological response more associated with disgust than fear, finds a new study published in PeerJ.

Trypophobia is not officially recognized in the American Psychiatric Association’s Diagnostic and Statistical Manuel of Mental Disorders (DSM). Many people, however, report feeling an aversion to clusters of holes — such as those of a honeycomb, a lotus seed pod or even aerated chocolate.

“Some people are so intensely bothered by the sight of these objects that they can’t stand to be around them,” says Stella Lourenco, a psychologist at Emory University whose lab conducted the study. “The phenomenon, which likely has an evolutionary basis, may be more common than we realize.”

Previous research linked trypophobic reactions to some of the same visual spectral properties shared by images of evolutionarily threatening animals, such as snakes and spiders. The repeating pattern of high contrast seen in clusters of holes, for example, is similar to the pattern on the skin of many snakes and the pattern made by a spider’s dark legs against a lighter background.

“We’re an incredibly visual species,” says Vladislav Ayzenberg, a graduate student in the Lourenco lab and lead author of the PeerJ study. “Low-level visual properties can convey a lot of meaningful information. These visual cues allow us to make immediate inferences — whether we see part of a snake in the grass or a whole snake — and react quickly to potential danger.”

It is well-established that viewing images of threatening animals generally elicits a fear reaction in viewers, associated with the sympathetic nervous system. The heart and breathing rate goes up and the pupils dilate. This hyperarousal to potential danger is known as the fight-or-flight response.

The researchers wanted to test whether this same physiological response was associated with seemingly innocuous images of holes.

They used eye-tracking technology that measured changes in pupil size to differentiate the responses of study subjects to images of clusters of holes, images of threatening animals and neutral images.

Unlike images of snakes and spiders, images of holes elicited greater constriction of the pupils — a response associated with the parasympathetic nervous system and feelings of disgust.

“On the surface, images of threatening animals and clusters of holes both elicit an aversive reaction,” Ayzenberg says. “Our findings, however, suggest that the physiological underpinnings for these reactions are different, even though the general aversion may be rooted in shared visual-spectral properties.”

In contrast to a fight-or-flight response, gearing the body up for action, a parasympathetic response slows heart rate and breathing and constricts the pupils. “These visual cues signal the body to be cautious, while also closing off the body, as if to limit its exposure to something that could be harmful,” Ayzenberg says.

The authors theorize that clusters of holes may be evolutionarily indicative of contamination and disease — visual cues for rotten or moldy food or skin marred by an infection.

The subjects involved in the experiments were college students who did not report having trypophobia. “The fact that we found effects in this population suggests a quite primitive and pervasive visual mechanism underlying an aversion to holes,” Lourenco says.

Since the time of Darwin, scientists have debated the relation between fear and disgust. The current paper adds to the growing evidence that — while the two emotions are on continuums and occasionally overlap — they have distinct neural and physiological underpinnings.

“Our findings not only enhance our understanding of the visual system but also how visual processing may contribute to a range of other phobic reactions,” Ayzenberg says.

A third co-author of the study is Meghan Hickey. She worked on the experiments as an undergraduate psychology major, through the Scholarly Inquiry and Research at Emory (SIRE) program, and is now a medical student at the University of Massachusetts.

Related:
How fear skews our spatial perception
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Friday, October 20, 2017

Responding to climate change


By Martha McKenzie
Emory Public Health

Climate change. Partisan politicians debate its reality, and many citizens see it as a faraway threat, something that endangers the future of polar bears but not them personally.

The health effects of global warming, however, are already being felt. Extreme weather events such as wildfires, droughts, and flooding are becoming more frequent, resulting in more injuries, deaths, and relocations. Heat and air pollution are sending people with asthma and other respiratory ailments to the emergency room. Diseases carried by mosquitoes, fleas, and ticks are expanding their territory—dengue has become endemic in Florida, Lyme disease has worked its way up to Canada and over to California, and some fear that malaria may re-emerge in the U.S.

Tie these health burdens—which are only likely to worsen—with the current administration’s decision to pull out of the Paris climate agreement and dismantle environmental regulations, and the call to action becomes more urgent. “The federal government’s actions might be a headwind from a funding perspective, but they are also very much a tailwind from an inspiration and motivation perspective,” says Daniel Rochberg, an instructor in environmental health who worked for the U.S. State Department as special assistant to the lead U.S. climate negotiators under presidents Bush and Obama. “As others have said, ‘We are the first generation to feel the sting of climate change, and we are the last generation that can do something about it.’ We have to get busy doing something about it.”

Rollins School of Public Health has gotten busy. Faculty researchers are building the science of climate impacts, strategies for reducing greenhouse gas emissions, and approaches for increasing resilience to climate change. Climate@Emory, a university-wide organization of concerned students, faculty, and staff, is partnering with other academic institutions, industries, and governments to support education and climate remediation efforts. Through Climate@Emory’s initiative, Emory University is an accredited, official observer to the UN climate talks and has sent students and faculty to the climate conferences in Paris in 2015 and in Marrakech in 2016. And, of course, Rollins is educating the next generation of scientists who will be dealing with the fallout of today’s climate decisions.

“For environmental scientists, it’s a challenging climate,” says Paige Tolbert, O. Wayne Rollins Chair of Environmental Health. “That means we have to be creative, because we can’t step aside and wait four years. It’s more critical than ever that we keep moving forward and make whatever contributions we possibly can.”

Read more in Emory Public Health.

Related:
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Catalyst for change
How will the shifting political winds affect U.S. climate policy?
Peachtree to Paris: Emory delegation headed to U.N. climate talks

Thursday, June 22, 2017

Mouse study suggests how hearing a warning sound turns into fearing it over time

Fluorescent tagging shows the perineuronal nets (in red) surrounding neurons (in green) of mice. Emory researchers identified a role these nets play in "capturing" an auditory fear association.

By Carol Clark

The music from the movie “Jaws” is a sound that many people have learned to associate with a fear of sharks. Just hearing the music can cause the sensation of this fear to surface, but neuroscientists do not have a full understanding of how that process works.

Now an adult mouse model reveals that changes in lattice-like structures in the brain known as perineuronal nets are necessary to “capture” an auditory fear association and “haul” it in as a longer-term memory. The journal Neuron published the findings by scientists at Emory University and McLean Hospital, a Harvard Medical School affiliate.

The findings could aid research into how to help combat veterans suffering from post-traumatic stress disorder (PTSD).

“We’ve identified a new mechanism — involving the regulation of perineuronal nets in an adult auditory cortex — that contributes to learning an association between an auditory warning and a fearful event,” says Robert Liu, a senior author of the study and an Emory biologist focused on how the brain perceives and processes sound. “It’s surprising,” he adds, “because it was previously thought that these perineuronal nets did not change in an adult brain.”

Another novel finding by the researchers: It’s not just activity in the auditory cortex during a fear-inducing experience associated with sound, but after the experience that is important for the consolidation of the memory.

“What is unexpected is that this brain activity was not in direct response to hearing the actual sound, since animals were just sitting in a quiet room during that period,” Liu says. “This finding could fit with an idea that’s been around for some time, that the way your brain consolidates memories of your day’s experiences is by replaying the events after they have happened.”

The amygdala — a region of the brain located within the temporal lobes — has long been tied to learning what stimuli can trigger emotional reactions such as fear. More recent studies have shown the firing of circuits in the auditory cortex during a threatening sound also play a role in learning what signals should set off a fear reaction.

The auditory part of the brain goes from the ear and cochlea through several stages to reach the auditory cortex — the highest neural processing level for sounds.

Perineuronal nets (PNN) are extracellular lattices that surround and stabilize neurons. During childhood development they have plasticity. “When they eventually mature, they crystalize, locking down the anatomy around the neurons and forming a kind of scaffold,” Liu says. “It’s been thought that these nets remained largely stable in adulthood.”

The mice used in the current research were trained to associate the sound of a tone with a mild shock. The animals eventually would freeze when they heard the sound, in anticipation of the mild shock. Days later, they continued to freeze at the sound even when the shock no longer followed it. The researchers found that, after the fear-association experience, a transition period lasting about four hours occured in which the PNN in the rodents’ auditory cortex changed to become stronger.

“We speculate that the strengthening of these nets — just like during development — may be putting a brake on further neural plasticity and ‘locking in’ the fear association before other sound experiences interfere with the memory,” Liu says.

When some mice in the study were given an enzyme that dissolved the PNN in the auditory cortex, they stopped remembering to freeze at the sound of the tone. “We essentially removed these nets and that appeared to prevent the fear association from consolidating in the memory, so it fell away faster,” Liu says. “It’s counterintuitive. Before we would have thought if we removed the PNN it would have increased the potential for learning the fear association by increasing the plasticity of the neurons.”

Such research could aid in the development of an intervention for PTSD. “It suggests that there may be a window of time after someone experiences a trauma that you could give them a drug to silence activity in a particular area of the brain,” Liu says. “That might prevent them from consolidating a particular traumatic memory.”

The findings also add to data about how the brain learns in general, and the relationship between receiving new information and a critical time period needed to consolidate it, he says.

First author of the study is Sunayana Banerjee, who conducted the research while she was a post-doctoral fellow at Emory. Co-senior author is Kerry Ressler – a psychiatrist focused on PTSD who was formerly with the Yerkes National Primate Research Center and Emory University and is now at Mclean Hospital and Harvard Medical School. Co-authors include research specialist Hadj Aoued and Emory undergraduates Vanessa Gutzeit, Justin Baman and Nandini Doshi. The research was supported by the National Institutes of Health grants R21MH102191 and R01DC008343 and the Office of Research Infrastructure Programs’ Primate Centers P51OD11132.

Related:
Sensory connections spill over in synesthesia
Uncovering secrets of sound symbolism

Sunday, October 30, 2016

Could you pass the scream test?



Halloween is a time to celebrate primal instincts, including our fascination with screams. Emory psychologist Harold Gouzoules, who researches how we perceive and interpret screams, says humans scream in five different contexts: Aggression, fear, pain, excitement and startle.

In the above CNN video, Gouzoules gives reporter Elizabeth Cohen an informal "scream test," to see if she can tell the difference.

Related:
The psychology of screams

Monday, July 18, 2016

Adding anthropology to genetics to study ancient DNA

Kendra Sirak, an Emory PhD candidate in anthropology, is working as a visiting researcher at the Earth Institute at University College Dublin.

By Leslie King
Emory Report

Kendra Sirak, a PhD candidate in anthropology in the Laney Graduate School, is currently working in Ireland, testing the DNA of people ranging from medieval Nubians to an ancient Chinese specimen to an Irish rebel.

Originally from the small town of Dallas, Pennsylvania, Sirak attended Northwestern University on an athletic scholarship for field hockey. "Starting out in psychology, I was inspired by an amazing young professor and became hooked after writing a research paper about the allegedly extinct subspecies Homo sapiens idaltu," Sirak recalls. "I wanted to study the past of humanity so I added anthropology for a double major."

Sirak came to Emory in 2012, drawn by the opportunity to work with George Armelagos, Goodrich C. White Professor of Anthropology (who passed away in 2014).

"I emailed George, who was one of the gods of anthropology, not expecting an answer," she says. "He responded in 37 minutes."

Now, Sirak is working as a visiting researcher at the Earth Institute at University College Dublin. Her research has also taken her to Russia, Hungary, Romania, China, India and Italy to access DNA in human skeletons and train other researchers in those techniques.

In an interview from Ireland, Sirak talks about her work and how she came to add genetics to anthropology, resulting in fascinating research and career paths.

What led you to add genetics to anthropology? 

I had no interest in genetics, being totally dedicated to the study of human osteology and paleopathology. But George [Armelagos] believed DNA was going to become a critical part of anthropological research — and he couldn’t have been more right.

He proposed that I take some Nubian skeletal remains he had excavated in the 1970s to Ireland and learn how to do ancient DNA analysis at Trinity College Dublin.

I went home and cried because I didn’t want to say no, but I really, really did not want to go. However, I decided to just go anyway. It was the best academic decision I could have ever made. I stepped into the ancient DNA lab at Trinity and realized that I had been spelling “chromosome” wrong for as long as I could remember, which was where my knowledge of DNA was then.

What do you gain by combining anthropology with genetics in your research?

Genetics provides really fantastic, concrete data. However, it doesn’t provide the context that anthropology does. I like to think of genetics giving me the hard scientific data that I want, but anthropology adding in the human context and making the molecular data a human reality.

At Emory, I have learned how to think from a “biocultural” point of view. While many other anthropology programs stress only either a “biological” or a “cultural” approach, Emory combines the two.

I study the biology of past populations and I think about the way their culture and social environment could have influenced individual health and well-being, population demographics, patterns of morbidity and mortality, etc.

What have you been working on in Ireland? 

Primarily extracting and sequencing DNA from skeletal remains from two socially disparate medieval cemeteries at the site of Kulubnarti in Sudanese Nubia. I am also part of a collaboration between University College Dublin and Harvard Medical School’s Department of Genetics lab.

We were recently contacted by the Irish National Police to help identify the remains of Thomas Kent, executed by the British for his part in the Easter Rising insurrection in 1916 and buried in a shallow grave on the grounds of Cork Prison; however, his body could not be positively identified. Collaborating with another team, we came up with this novel method to compare genetic data collected from two of Kent’s known living relatives and confirm his identity. He was given an honorable burial and a big state parade.

What other projects do you have in the works? 

We hope to become involved in the Duffy’s Cut Project. Duffy’s Cut is the location of railroad tracks west of Philadelphia built by 57 Irish immigrants in the mid-1800s. All 57 are thought to have died from cholera. However, forensic evidence suggests that some might have been murdered, perhaps because of fear of contagion. We are hoping a DNA analysis on these samples will help identify these men and their family relationships.

We are in conversation with an Irish human rights group about identifying the remains of more than 800 Irish babies uncovered in a mass grave in western Ireland. This grave was a consequence of the period when it was not socially acceptable for a woman to have a baby out of wedlock. The ultimate goal would be a database of the unidentified infants’ genetic information. Then people who believe they might have some relative in this mass grave could be tested for a genetic match. This project was presented at the United Nations.

What are your post-Emory plans and goals?

My goal is to start writing my dissertation, a bioethnography of the ancient Nubians, this fall and be graduated from Emory in June 2018. Post-Emory, I can see myself applying for a postdoc position to expand my research, or I might like to get involved with scientific communication to the lay public. After taking a human genetics course taken at Emory, I’m really interested in genetic counseling. I’ve been thinking about becoming a certified genetic counselor.

What do you like to do in your “off” time? 

I am a world traveler, marathon runner and craft beer connoisseur. Studying anthropology and working in ancient DNA has given me incredible opportunities to travel around the world to collect samples for our analyses.

Related:
Bone to be wild: Every skeleton has a story to tell

Tuesday, June 14, 2016

Bridging ancient Tibetan medicine and modern Western science

Tawni Tidwell amid Tibetan prayer flags in eastern Tibet. Photo by Shane Witnov.

By Carol Clark

Tawni Tidwell is the first Westerner to be certified in Tibetan medicine by Tibetan teachers in the Tibetan language. The PhD candidate in Emory’s Department of Anthropology is now working on a dissertation about how Tibetan physicians diagnose diseases, especially cancer.

“I see myself as a bridge between Tibetan medicine and Western science,” says Tidwell, who became a Tibetan physician in 2015. “I feel like each has something to offer the other.”

Tidwell was born in Colorado but lived from the ages of two to five in South Korea, where her father was a U.S. Army surgeon. Tidwell and her mother lived in mainstream Seoul, which gave her an affinity for Asia when she returned to Colorado. She was also influenced by the Native American ancestry on both sides of her family and by the ecology of Colorado, where she became involved in rock climbing and winter mountaineering.

Tidwell has trained as an animal tracker, worked as a ranger at a biological preserve, taught wilderness survival lessons, and led gap-year students on trips to learn about traditional cultures through the “Where There Be Dragons” program.

Tidwell studied at the premier Tibetan medical school outside of Tibet, in northern India (the cultural and intellectual capital of the displaced Tibetan community). In order to enroll, she had to pass a five-day exam of memorized Tibetan grammar and Buddhist logic, as well as general Tibetan cultural knowledge. From there on, each year she had to recite from memory 115 pages of a medical textbook in Tibetan, considered one of the most difficult languages for non-native speakers to master. She also had to complete written exams, coursework and attend classes, all in the Tibetan language among Tibetan peers.

Below is an interview with Tidwell, covering some of the milestones of her long and winding road to becoming a certified Tibetan medical practitioner.

Where did you spend your undergraduate years? 

I went to Stanford, where I started out majoring in physics and pre-med, with the idea of a career focused on aerospace medicine, exploring questions like how the body adapts to space.

In physics, you take the extremes of a problem to understand how an average system operates. I thought if you studied how humans respond to extremes, then maybe you could find out more about how the human body works and responds to illness.

I was also really interested in the relationship between our bodies and the land. I eventually switched my major to Earth Systems. Stanford has a 2,000-acre biological preserve – ranging from redwoods to chaparral and perennial grasslands – where I worked as a docent and a ranger. I learned to identify dozens of different species of grass. I wanted to know why this grass species survives in the desert and another one doesn’t, and why the bobcat patrols this area and not another.

While ascending Illimani, a peak in western Bolivia, Tidwell pauses to take in the view.

When did you become interested in Tibetan culture?

I took a gap year after my freshman year and went to the Emory Tibetan Studies Program in north India, led by Tara Doyle (senior lecturer in Emory’s Department of Religion). I studied Buddhist philosophy and the Tibetan language, which is exquisite and poetic. The word for computer translates as “brain of light.”

The Tibetan language pays special attention to the sacred. It reminds you of the pursuit of understanding the reality we all experience and how one should live. It’s very specific about cognition and the mind and provides a much more detailed description of the trajectory of perception.

I feel different when I speak in Tibetan. People have told me that my whole body language changes.

Why did you enroll in an animal-tracking course?

I went to Washington, D.C., to work with an environmental organization. I realized that most of the environmental specialists in our nation’s capital had no time to spend in the natural world. They are completely disconnected from it. I wondered, what were humans like as foragers and what have we lost by being academic specialists without first-hand experience?

I went to New Jersey for a 10-day course taught by Tom Brown, Jr., an animal tracker and wilderness guru. He basically teaches what it takes to survive when you are butt naked in the woods and have nothing. In just the first class, you learn about wild edibles, how to make fire by friction, how to make two different traps and two different snares, and how to tan a hide. Other classes build on those basics.

What was your favorite part of your survivalist training?

Fire. There is something so enigmatic about making fire by friction. The experience ignites something deep in our past. It’s almost like creating life. You have to get a feel for the spindle and the fireboard. You apply just the right speed and pressure and when the fire comes out it’s like magic. And you realize that you can have a relationship to everything like that in the natural world.

After I finished the initial course, I realized it was really about putting in the experiential “dirt time’ to learn the skills. I took more courses and helped with teaching. I lived in the New Jersey pine barrens for about a year in a pit shelter, which was dug about four feet into the ground and was about 10 feet in diameter. It was full-on immersion in ecology.

I saw how some people’s lives changed as their wilderness survival skills accumulated. It gives you a certain freedom. People realize they don’t necessarily have to live in the way that they thought they had to live.

Tidwell with classmates, gathering native plants from the Tibetan plateau.

Do you ever get scared being alone in the wilderness? 

Scary movies make me scared, but not being alone in the forest. I imagine, though, that I would be scared in grizzly bear or polar bear territory, since they hunt humans.

Wolves don’t scare me because I read everything I could about the Arctic wolf when I was in elementary school – I was that kind of kid – and I knew they weren’t a threat to humans.

It’s actually part of Buddhist philosophy: The more you learn about the world, the more you learn about what you should, and should not, fear.

How did you wind up in Tibetan medical school?

In 2008, Tara Doyle asked me to return as assistant director of the Emory Tibetan Studies Program in north India.

While working in South America, I had met a curandero in Bolivia who told me that his grandmother had known more than 5,000 healing plants, he knew 2,000 and his daughter would know a few hundred or even fewer. I realized that Tibetan medicine is really unique in that it is this ancient medicinal system connected to the land – using medicines made from plants and minerals gathered from the Tibetan plateau, the highest place in the world – and it is also written down.

I thought that if I had a chance to study Tibetan medicine I could really do something with it. Dr. Khenrab Gyamtso, the vice principal of the Men-Tsee-Khang medical institute in north India, agreed to tutor me for a few hours at the end of every day, after he and I had already put in a full day of work. He eventually encouraged me to apply for enrollment.

What did your studies involve?
Medicinal herb from the Tibetan plateau


The first few years were mainly memorization of parts of the medical canon, more than 100 pages a year. And then at the end of every year you recite them. At first I didn’t value memorization but I eventually realized that it’s an amazing technology. It feels like a profound meditation. It’s clever in the sense that it forces you to focus while also giving your mind a break. The text is written poetically and you start noticing associations and layers of meaning. Layers of your mind also start emerging. It’s a fascinating thing to observe.

After five years of classes, I transferred to eastern Tibet’s Tibetan Medical College of Qinghai University in Xining, China. Under the mentorship of senior doctors, I was able to do patient rounds in the gastroenterology department of the hospital there. All that memorization prepared my mind to have a strong presence with each patient and really focus on what each one said to me.

What are some of the distinctive aspects of Tibetan medicine? 

Tibetan medicine co-evolved with Buddhism. Contemplative introspection into the mind is complemented by introspection into the body. For example, in the case of chronic pain, Tibetan medicine prescribes medication along with recommendations for diet and ways to reduce mental distress and suffering. Research has shown that some meditators can identify physical pain locales on their body but they don’t have the same mental response that a lot of other people have to it.

We’re one of the few species in the animal kingdom that can evoke stress just by thinking about a threat. What are the changes in the mind when you become afraid, jealous, angry or sad? These emotions create biological changes in the body. Tibetan medicine treats the mind and the body at the same time. If you have diabetes or hypertension, it can get worse if you are highly reactive to circumstances in your life. This phenomenon is related to a concept called rlung (pronounced loong). These are wind pathways in the body that the mind rides on, which in Western medicine is related to the neuroendocrine system.

Connecting the mind and body to treat patients is ancient practice in Tibetan medicine, but it has only started gaining importance in Western medicine in the past decade or so.

Do you think Tibetan medicine is superior to Western medicine?

No. I feel like there is a lot of learning to do on both sides. My dad is an orthopedic surgeon. There are some things that Western medicine does very well.

Modern Tibetan medical practitioners don’t do surgery but they may advocate it at times – historically, we performed minor procedures like cataract surgery. Our canon says that anything that benefits a person is Tibetan medicine. So if the results of an X-ray or blood test could give you valuable information about a patient, you would welcome that. It’s a realist perspective more than anything else. And I would also say that it’s more holistic.

Some people have such a suspicion of anything that’s not Western medicine, they just refuse to consider it. I find that non-scientific. The research done on other medical systems is so poor we can’t say that we know whether these things don’t work on some level. Westerners sometimes forget that a human connection is healing and we try to operationalize everything. We’re not allowed to have art in medicine, but sometimes that art is what makes it more effective.

All photos courtesy of Tawni Tidwell

Related:
Her patient approach to health: Tapping traditional remedies to fight modern super bugs
Chestnut leaves yield extract that disarms deadly bacteria

Thursday, May 19, 2016

Memoir details the making of a mathematician

From the cover of a memoir by Emory mathematician Ken Ono, recently published by Springer.

Quanta Magazine interviewed Emory mathematician Ken Ono about his new memoir, “My Search for Ramanujan: How I Learned to Count,” which he co-authored with the late Amir Aczel. The book describes how Ono grew up under such relentless pressure to succeed that he developed a crippling fear of failure that caused him to drop out of high school. He eventually found his way to the path of a successful math career, guided by various mentors and by the story of Indian math genius Srinivasa Ramanujan, who endured struggles of his own.

As Ono explains in the Quanta interview:

“For whatever reason, we live in a culture where we think that the abilities of our best scientists and our best mathematicians are somehow just God-given. That either you have this gift or you don’t, and it’s not related to help, to hard work, to luck. I think that’s part of the reason why, when we try to talk about mathematics to the public, so many people just immediately respond by saying, ‘Well, I was never very good at math. So I’m not really supposed to understand it or identify with it.’ I might have had some mathematical talent passed through my father genetically, but that was by no means enough. You have to be passionate about a subject.

“At the same time, I want it to be known that it’s totally okay to fail. In fact, you learn from your mistakes. We learn early on if that you want to be good at playing the violin, you’ve got to practice. If you want to be good at sports, you practice. But for some crazy reason, our culture assumes that if you’re good at math, you were just born with it, and that’s it. But you can be so good at math in so many different ways. I failed my [graduate-school] algebra qualifications! That doesn’t mean I can’t end up being a successful mathematician. But when I tell people I failed at this, nobody believes me.”

Read the whole interview in Quanta.

Related:
Templeton World Charity to fund 'Spirit of Ramanujan' fellows

Thursday, March 10, 2016

A scientist's view from Earth's highest mountains

"As difficult and dangerous as mountain climbing can be, it's also an absolutely wonderful experience. You have to live it to understand it," says Stefan Lutz, chair of chemistry at Emory, shown during a Denali expedition.

By Carol Clark

In December of 2012, Stefan Lutz summited the 22,841-foot peak of Aconcagua, the highest mountain in the Western hemisphere, located in western Argentina. “The view from the top was amazing. When you look to the horizon and see the curvature of the Earth, you realize that you’re in a pretty special place,” says Lutz, professor and chair of chemistry at Emory. He is also a dedicated mountaineer who will attempt to climb Mount Everest this spring.

After a few minutes spent admiring the view from atop Aconcagua, it was time to descend. Lutz and a guide maneuvered down a particularly steep section and sat down to wait for the rest of their group.

“It was a beautiful day. I remember drinking and eating a bit of food, just trying to re-energize myself,” Lutz says. “Then I noticed a man, a climber I didn’t know, standing alone, maybe 20 feet away. He just kept standing, still as a statue. It’s exhausting at that altitude and I wondered, ‘Why doesn’t he sit down?’”

Lutz mentioned it to the guide who then approached the man. “As soon as the guide put his hand on the guy’s shoulder, he collapsed,” Lutz recalls.

They gave him some water and asked, “Do you know where you are?”

“Yes,” the man replied, “I’m on Mount Fuji.”

It was clear that the confused mountaineer, a Japanese man climbing solo, was suffering acute mountain sickness. “He was in serious trouble,” Lutz says. “Luckily, some Argentine park rangers came along. They gave him bottled oxygen which helped him recover enough that he could be helped back down the mountain.”

Without the assistance of the rangers, the climber’s condition might have progressed to high altitude cerebral edema – a severe and, if untreated, fatal form of altitude sickness when capillary fluid leaks into the blood-brain barrier due to the effects of inadequate oxygen.

“That’s the highest I’ve climbed – 22,841 feet,” Lutz says. “It’s very humbling. Even a fit person moves like a turtle at that altitude.”

Bright sunshine at 3 a.m. during a Denali expedition in Alaska.

The experience was another stark reminder to Lutz, who is 46, that his passion for climbing comes with great risks along with the rewards. “It’s not about being a thrill seeker,” Lutz says, trying to explain why he climbs. “As difficult and dangerous as mountain climbing can be, it's also an absolutely wonderful experience. You have to live it to understand it. You get a high from it that stays with you.”

A native of Switzerland, Lutz grew up hiking and being in the mountains. Five years ago, he became more serious about his hobby and started a quest to climb the Seven Summits – the highest peak on each of the continents. He leaves March 26 for Nepal and a two-month expedition to climb Mount Everest. If his Everest bid is successful, it will mark the sixth of the Seven Summits for Lutz. You can follow his team’s progress on the web site of the expedition leader, International Mountain Guides.

As part of his physical conditioning, Lutz never takes the elevator as he roams around the Emory Chemistry Center. Instead, he climbs the stairs with his large, red, expedition backpack – loaded with 60 pounds of sand – strapped to his six-foot-four frame.

Lutz is a biomolecular chemist who uses protein engineering to develop catalysts for therapeutic and industrial applications. He also enjoys teaching, and takes examples from his climbing experiences into the classroom to convey some of the complex concepts in biochemistry. “Using my mountaineering experiences brings these concepts to life and gets students more engaged,” Lutz says. “Most of them have experienced at least a hint of what I talk about, like the feeling you get at higher altitudes when hiking or skiing, so they relate to it.”

Lutz’ scientific training deepens his understanding of extreme landscapes and the physical and mental processes a climber may experience. Following is a bit of Lutz’ perspective on mountaineering, in his words and photos.

Landing in Antarctica for an expedition up Mount Vinson, the most remote, and the least climbed, of the Seven Summits.

The environment of the southern polar region 

At 16,050 feet, Mount Vinson is the highest peak in Antarctica. To get there, you start with a five-hour flight on a jet plane from Punta Arenas on the southern tip of South America to an icy airfield in the center of Antarctica. Next, you get in a DC3 fitted with skis for a 45-minute flight that sets you down nearer Mount Vinson. From there, you take an even smaller propeller plan to reach the base camp.

Antarctica stores about 65 percent of all the fresh water in the world in the form of ice. You fly over an area of incredible beauty and realize that it looks the same as it did tens of thousands of years ago. No human being has touched it and many places have had no precipitation for more than 100,000 years – just snow drifts. Antarctica is the driest continent and is actually one of the marvelous, great deserts of Earth. Humidity is in the single digits and it feels like you are in an evaporator, turning into dried fruit. The temperature routinely drops to minus 40 degrees Fahrenheit. You look to the horizon and all you see is snow, and more snow, and a few rocks. It’s beautiful in its simplicity.

We were there in December, which is mid-summer in the southern hemisphere. Since we were only about 700 miles from the South Pole, bright sunshine streamed into our tents even at 2 a.m. The snow is like a mirror. You have to wear glacier sunglasses all the time or you can go snow blind within 15 minutes. Every speck of exposed skin has to be covered with a thick layer of sunblock to avoid massive sunburn. We had one team member who forgot to put sunblock on the bottom of his nose and ended up with a really painful burn of his nostrils.

Above the clouds: Lutz makes his way up the West Buttress Ridge of Denali, with Mount Foraker in the background.

The physiology of extreme cold 

Denali in Alaska is North America’s highest peak at 20,310 feet. It’s at about 63 degrees northern latitude. To reach base camp, you fly in a single-prop plane between snow-covered peaks and land on a glacier. The plane takes off and you and your teammates are now about 70 miles away from any human habitation and, basically, living in a freezer for three weeks. The average temperature is around 0 degrees Fahrenheit. Everything that you need to climb and to survive for the next 20 days is loaded into a 60-pound pack that you carry on your back and on a sled that you pull behind you, which holds another 50 pounds.

As you work your way up the mountain, your metabolism goes into overdrive to provide sufficient muscle energy and maintain body heat in the cold. That turns climbing into an all-you-can-eat contest. I switched from my normal 2000-calorie-per-day diet to about 12,000 calories per day. And I still lost 12 pounds during my three weeks climbing the mountain! Believe it or not, it’s not easy consuming this amount of calories. At higher elevations, your appetite diminishes. Food that tastes delicious at sea level suddenly becomes unappealing as your taste perception changes. Experience has taught me to leave behind my beloved salami when climbing and instead stuff my pockets with Snickers bars and chocolate-covered raisins. I ate about 25 pounds of candy during the Denali trip. 

Burning calories to generate energy and heat is an oxidation process, and the higher you go, the less oxygen in the atmosphere. To manage the extreme altitude of Mount Everest, which is 29,035 feet, most climbers use supplemental oxygen to stay warm. You can wear lots of insulating gear but if you are not getting enough oxygen to burn fuel, you still start shivering. And if shivering is not enough to warm you up, you can develop hypothermia. At the same time, you are at risk for frostbite – the result of your body saying, “I can live without my fingers and toes, arms and legs.” It pulls your blood into your core to make sure your critical organs have sufficient blood supply. That process can happen faster at higher altitude.

Roped together on Denali. "You form a unique bond with the people that you climb with, the people on the same rope as you," Lutz says.

The biochemistry of altitude sickness

The summit of Denali has 50 percent less oxygen than at sea level. Atop Everest that percentage drops to 30 percent. Even without exercising these low oxygen levels can make you feel like you’re suffocating. You start to breathe faster to take in more oxygen but with each breath, you also exhale carbon dioxide.

Carbon dioxide is part of a buffer system in the bloodstream that prevents the pH level in cells to fluctuate. All the proteins in our cells rely on steady acidity. But if you pump out too much carbon dioxide from your body, the buffer system goes haywire and you can develop a condition called alkalosis.

Respiratory alkalosis, which is a result of blood pH rising beyond the normal range, starts off as a mild headache but can quickly progress to severe head pain and nausea. Worst of all, it has little to do with fitness. I’ve seen very strong athletes crumple up with these symptoms. If untreated, you start vomiting violently, leading to more dehydration. The condition can progress to where cellular fluid starts leading from your brain, known as cerebral edema, or your lungs, known as pulmonary edema. 

Medication such as Diamox can help the body more quickly adjust to higher altitude but the best approach is to slowly and gradually hike to higher elevations. That gives your body time to acclimatize to the thin air. It’s the reason that climbers spend nearly two months at the Everest base camp before attempting to reach the summit.

Navigating ice crevices of Denali. "Fear can become your ally by keeping you focused and alert," Lutz says.

The psychology of endurance and fear 

Mountaineering is an endurance sport but only part of that is physical endurance. A majority of it comes from your head. It can take sheer willpower to keep you going when you are cold and exhausted. Your mind has to convince your body to take the next step, hour after hour, as you work your way towards a summit. On the flip side, you can have a sunny day, blue sky and no wind and know that you are going to make it. Psychologically, it’s a breakthrough moment: A feeling that no money can buy.

The summit, however, is only the halfway point. A majority of mountaineering accidents happen during the descent. People are euphoric, but also exhausted physically and mentally. You can never let down your inner guard because you’re operating in an environment with little room for error. All it takes is one misstep.

Fear can become your ally by keeping you focused and alert. I remember traversing a narrow section on Denali called the Windy Corner. To one side of you is a rock wall. On the other side are ice crevices big enough to swallow a school bus. Rocks the size of fists fall from that rock wall and you have to dodge them almost like you are in a computer game. If a rock hits your lower body it can shatter a bone. If one hits you on the head, it can kill you. Getting through there only took a few minutes but it’s an experience that I won’t forget.

Fear can also give you strength. While climbing in the Denali range, we were roped together in groups of four as a safety precaution due to all of the crevices. One moment we were moving through a snowy glacier landscape. The next moment, one of our team members in the group just ahead of mine simply disappeared. There was no sound, just the sight of the rope running. His body had broken through a bridge of thin snow and was plummeting into a dark abyss in the ice. The team members he was roped to immediately dropped to the ground and anchored their axes into the ice to stop the fall. They then used the rope and their gear to quickly build a pulley system and extract our comrade from the crevice. After about 20 minutes of hard work by the team he was back on the glacier surface, shaken but unhurt. You would think they would be too fatigued from climbing to respond so quickly and energetically, but in a situation like that your heart rate spikes and your adrenaline level goes through the roof.

Lutz, in yellow parka, enjoys a brief celebration with teammates after they reached the summit of Denali. "These are the kinds of friendships that last forever," he says.

The sociology of bonding during intense experiences 

You forge a unique bond with the people that you climb with, the people on the same rope as you. You’re putting your lives in one another’s hands.

On Aconcagua, two of my teammates and I were crammed into our small tent one night when a ferocious blizzard hit, with winds up to 80 miles-per-hour. Nobody wants to be out in that kind of weather. Yet, every hour or so, one of us had to crawl out and dig out the tent so we would not get buried in snow. We took turns shoveling. Meanwhile, the two inside the tent made sure they had a hot drink ready when the other one finished a round.

Pulling together as a team to overcome tremendous challenges, in spite of everyone being mentally and physically exhausted, builds deep camaraderie. These are the kinds of friendships that last forever.

Related:
How a hike in the woods led to a math 'Aha!'
The math of rock climbing
Proving math is good for endurance sports

All photos by Stefan Lutz or courtesy of Stefan Lutz.

Monday, August 3, 2015

Math shines with the stars in 'The Man Who Knew Infinity'



By Carol Clark

Call it a math bromance. Cambridge mathematician G. H. Hardy’s collaboration with the obscure, self-taught Indian Srinivasa Ramanujan – during the height of British colonialism – changed math and science forever. The story is finally going mainstream through a major motion picture, “The Man Who Knew Infinity," starring Dev Patel and Jeremy Irons.

“It’s the story of a man who overcame incredible obstacles to become one of the most important mathematicians of his day,” says Emory mathematician Ken Ono, who served as a consultant for the film. “It’s a great human story. It’s true. And I’m glad that the world is finally going to get to enjoy it.”

The Mathematical Association of America (MAA) will feature a sneak peak of “The Man Who Knew Infinity” on August 6, as part of its centennial celebration, MathFest 2015, in Washington D.C. Ono, a leading expert on Ramanujan’s theories, will lead a panel discussion at the screening event, which begins at 5 pm at the Marriott Wardman Park. Panelists will include Princeton mathematician Manjul Bhargava; Robert Kanigel, who wrote the 1991 book that the movie is based on; and Matt Brown, the screenwriter and director of the movie.

The movie’s world premier is set for September at the Toronto International Film Festival.

In 1913, Ramanujan wrote a letter to Hardy, including creative formulas that clearly showed his brilliance. Hardy invited Ramanujan to come to Cambridge to study and collaborate, a daring move during a time of deep prejudice.

“Together, they produced phenomenal results,” Ono says. “They changed mathematics and they changed the course of science.”

Ken Ono on the set with Jeremy Irons, who plays Cambridge mathematician G. H. Hardy. (Photo by Sam Pressman.)

A relatively unknown director, Matt Brown spent eight years trying to get the movie project off the ground. He eventually found backing from the producer Ed Pressman of Pressman Films.

“This is not your typical Hollywood film,” Brown says of the final product. “A lot of movies that deal with scientific subjects just mention the science and go straight to the human story. We wanted to honor the math in this film, so that mathematicians could appreciate it as well as other audience members. One way we tried to do that was to show the passion the characters have for the subject.”

When Brown called Ono out of the blue last August and asked him to help with the math on the film, Ono did not hesitate. He was soon on a plane from Atlanta to London to begin putting in 16-hour days on the set at Pinewood Studios with the cast and crew.

“I’ve never met anybody with more energy and enthusiasm for his work than Ken,” Brown says. “It was invaluable to me as a director to have him go over the script and make sure that the math was accurate. He was incredibly kind and patient. It gave me confidence.”

Ono also worked closely with the art department, to get details of the math visuals right, and coached the stars, Dev Patel and Jeremy Irons. “Ken helped the actors understand philosophically what was behind the mathematics,” Brown says. “He gave them a little window into it. That’s important because when an actor grasps the meaning of the lines, he can add nuance and subtext to a performance.”

Ultimately, the film is about the relationship between Hardy and Ramanujan, Brown says. “Hardy fought really hard to get Ramanujan honored and bring him into the elite of Trinity College at Cambridge. Hardy basically staked his career on him.”

It was especially risky since Ramanujan did not work like a traditional academic. He did not see the need of providing proofs for his fantastic formulas, and believed that they came to him as visions from a goddess.

“Ramanujan saw the world, and math, in a spiritual way,” Brown says. “It’s incredible that he wound up at Cambridge with Hardy, an atheist, as his mentor.”

Unfortunately, while Hardy proved a great academic mentor for Ramanujan, it took longer for their friendship to evolve. “This movie tells a story about the cost that comes when people wait out of fear to connect more deeply in their relationships,” Brown says.

Related:
Doing math with movie stars

Saturday, May 16, 2015

A physicist's guide to foam and fortune

From foam to Frankenstein: Sidney Perkowitz enjoys a cappuccino (extra foam) at the Ink and Elm in Emory Village. So far this year he has published his first e-book, Universal Foam 2.0, and started work on a new book project, "Frankenstein 2018." (Photo by Carol Clark)

By Carol Clark

You never know what’s going to bubble up on the agenda of physicist Sidney Perkowitz, Emory Candler Professor of Physics Emeritus. Since the 76-year-old Perkowitz retired in 2011, he seems to pop up everywhere, from the Atlanta Science Festival to South Korean national television to a high-level policy meeting in Washington DC.

After 42 years of research and teaching at Emory, he has shifted his focus from the lab and classroom to the wider world. His mission: Communicating science in ways that get people interested and better informed.

“You’re doing something good for society if you can convey science well to a lay person,” Perkowitz says. “You can have an influence over everyone from a child to a congressman.”

Perkowitz began writing about physics for a general audience when he was about 50. “It forced me to be humble because I had a lot to learn,” he says. “Several editors really helped improve my writing. One gave me this great tip: “Remember, you don’t want to simplify the science. You want to simplify the writing.’”

Perkowitz has written six books about physics geared for a lay audience. His most successful, “Universal Foam,” was published in 2001 and remained in print through 2008, including five foreign editions. The book describes the myriad incarnations and inherent mysteries of foam, from densely packed bubbles floating atop a cappuccino to ocean white caps, soap bubbles, and exotic foamy materials used in aerospace and medicine.

Watch a clip from an English-language version of a South Korean documentary inspired by Perkowitz' book on foam, including interviews with Perkowitz:


Last fall, the book brought a Korean television film crew to Perkowitz’s door. “The filmmakers had contacted me out of the blue and said they wanted to make a documentary for children based on the book,” he says. “They sent over a cameraman, a sound guy, a director and a translator.”

So that’s how Perkowitz found himself in his kitchen, brewing a cappuccino as he was being interviewed about the wonders of foam. “We had a wonderful time,” he says of the experience. “The most amazing part was they paid me! It wasn’t a lot, but I was just doing it for fun. So that was a pretty great deal.”

The documentary, “Bubbles That Can Change the World,” was funded by the South Korean government and shown throughout the country as a way to inspire children’s interest in science.

After the publisher stopped putting out new editions of “Universal Foam,” Perkowitz obtained the rights so that he could update it himself as an e-book in January. He titled it “Universal Foam 2.0” “It’s amazingly easy,” Perkowitz says of the process of producing an e-book. He adds that he primarily did it to gain experience with e-books, and doesn’t expect it to sell many copies at this stage. “I just love learning something new and being engaged,” he explains. “And I want to feel that I’m doing something useful for science.”

During the past four years, Perkowitz has also written 20 magazine articles, given public talks, and serves on the science outreach committee of the American Association for the Advancement of Science, which takes him to Washington DC occasionally.

A selection of some of the many editions of Mary Shelley's classic "Frankenstein." (Andy Marbett)

Perkowitz is now at work on this seventh book, which has the working title "Frankenstein 2018." He is both contributing a chapter and co-editing the book, an anthology due out March 11, 2018, the bicentennial of the publication of Mary Shelley’s novel.

“There is something in humanity that wants to find a way to create life and to live forever. But that same desire is also full of fear,” Perkowitz says of the enduring appeal of Frankenstein.

The subject is more relevant than ever. Emory’s Center for Ethics is hosting a major international gathering in Atlanta May 17 to 19, to discuss both aspirations and guidelines for the era of synthetic biology. Biotechnology and the Ethical Imagination: A Global Summit (BEINGS) will bring together delegates from the top 30 biotechnology producing countries of the world.

“The idea of genetic engineering and creating an entirely new being is the 21st-century version of Frankenstein,” Perkowitz says. “Earlier, creating life was envisioned as stitching together dead body parts and zapping them with electricity. Now it’s about getting a micro-scalpel and moving around genes. Some people are afraid of genetically modified food. Imagine how they’ll feel about genetically modified animals and people.”

Perkowitz’ co-editor for the book project is Eddy Von Mueller, an Emory lecturer in film and media studies. The two have already rounded up a dozen contributors for the project, from religion, the arts and sciences, and secured a contract from Pegasus Books.

“Frankenstein is taught often in college classrooms, so we think this anthology might be a good seller as a textbook,” Perkowitz says. “The publisher agreed.”